species:   Drmel
pid:       MI0005823
parent:    dme-mir-967
paralog:   
locus:     NT_033779.5:12460004-12460100
matures:   ['AGAGAUACCUCUGGAGAAGCG', 'CUUUUCCACCUAGGUGUCUCUC']
srr:       SRR11906543
genome:    /Users/jax/+Genomes/Animal_genomes/Drmel.GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Drmel.SRR11906543.cram NT_033779.5:12460004-12460100

0 out of bounds
5 alignments
5 proper strand
3 stranded perfect matches

        ***********************                               ************************           
CUUGGAGAGCAGAGAUACCUCUGGAGAAGCGCGUGACCUGACCCCAGCAGGAGAACCCAACCCGCUUUUCCACCUAGGUGUCUCUCUCUCUCUUUAU
...((((((.((((((((((.((((((((((.((..((((.......))))........)).))))))))))...))))))))))))))))......
----------AGAGAUACCUCUGGAGAAGCG------------------------------------------------------------------ l=21 a=0 c
----------------------------------------------------------------CUUUUCCACCUAGGUGUCUCUC----------- l=22 a=2 c*
----------------------------------------------------------------CUUUUCCACCUAGGUGUCUCUC----------- l=22 a=2 ma
----------AGAGAUACCUCUGGAGAAGCG------------------------------------------------------------------ l=21 a=0 ma*

----------------------------------------------------------------CUUUUCCACCUAGGUGUCUCUC----------- l=22 a=2 (c*,ma)
--------------------------------------------------------------CGCUUUUCCACCUAGGUGUCUC------------- l=22 a=1 
------------AGAUACaUCUGGAGAAGC------------------------------------------------------------------- l=18 a=1 
----------AGAGAUACCUCUGGAGAAGCGa----------------------------------------------------------------- l=22 a=1 

mb-01111
ax-1011011
ku-01
ss-101111111100
fn-011
